changed groupfile in classify.seqs to reflect multiple fasta files

[mothur.git] / trimseqscommand.h

diff --git a/trimseqscommand.h b/trimseqscommand.h
index 11778fb9583f5af72b7def6c5ce421d59802dde5..601cb6129d1ba5a32e54dad125e4689d9559d5d6 100644 (file)
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -44,7 +44,7 @@ private:
        string fastaFile, oligoFile, qFileName, outputDir;
        
        bool flip, allFiles, qtrim;
-       int numFPrimers, numRPrimers, maxAmbig, maxHomoP, minLength, maxLength, qThreshold, qAverage, processors;
+       int numFPrimers, numRPrimers, maxAmbig, maxHomoP, minLength, maxLength, qThreshold, qAverage, processors, diffs;
        vector<string> forPrimer, revPrimer, outputNames;
        map<string, int> barcodes;
        vector<string> groupVector;