added checks to make sure windows processes completed their tasks.

[mothur.git] / trimseqscommand.h

diff --git a/trimseqscommand.h b/trimseqscommand.h
index 891b14dc463342e9403aab317fc0877fdd78e82c..2ab7de3e7fc62835429581757fda19f25abad030 100644 (file)
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -254,7 +254,7 @@ static DWORD WINAPI MyTrimThreadFunction(LPVOID lpParam){
                
                TrimOligos trimOligos(pDataArray->pdiffs, pDataArray->bdiffs, pDataArray->ldiffs, pDataArray->sdiffs, pDataArray->primers, pDataArray->barcodes, pDataArray->revPrimer, pDataArray->linker, pDataArray->spacer);
         
-               pDataArray->count = pDataArray->lineEnd;
+               pDataArray->count = 0;
                for(int i = 0; i < pDataArray->lineEnd; i++){ //end is the number of sequences to process
                                   
                        if (pDataArray->m->control_pressed) { 
@@ -281,6 +281,7 @@ static DWORD WINAPI MyTrimThreadFunction(LPVOID lpParam){
                        
                        string origSeq = currSeq.getUnaligned();
                        if (origSeq != "") {
+                pDataArray->count++;
                                
                                int barcodeIndex = 0;
                                int primerIndex = 0;