fixes while testing

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 56fd8c54b53aaff9f4e43e8e694fc71f6987fd7c..f684b66a8e72d18f98172579197fac7cc5a2f543 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -26,6 +26,7 @@ vector<string> TrimSeqsCommand::getValidParameters(){
 //**********************************************************************************************************************
 TrimSeqsCommand::TrimSeqsCommand(){    
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["fasta"] = tempOutNames;