initialized numLinkers and numSpacers in trim.seqs and trim.flows

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 5d4eb39d16f3bdc575a3ee41125705c90da9824f..f00743c546d22879f930bf25c741cdbcdd3e7fe5 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -329,6 +329,8 @@ int TrimSeqsCommand::execute(){
                
                numFPrimers = 0;  //this needs to be initialized
                numRPrimers = 0;
+        numSpacers = 0;
+        numLinkers = 0;
                createGroup = false;
                vector<vector<string> > fastaFileNames;
                vector<vector<string> > qualFileNames;