working on testing for 1.13

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index acdf475a17ccc544c96e6d519d58867cf50b3374..e47e71d581d9a24f5b4c5ced4ac1875a94b1d269 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -224,9 +224,8 @@ int TrimSeqsCommand::execute(){
                string scrapSeqFile = outputDir + m->getRootName(m->getSimpleName(fastaFile)) + "scrap.fasta";
                outputNames.push_back(scrapSeqFile);
                string trimQualFile = outputDir + m->getRootName(m->getSimpleName(fastaFile)) + "trim.qual";
-               outputNames.push_back(trimQualFile);
                string scrapQualFile = outputDir + m->getRootName(m->getSimpleName(fastaFile)) + "scrap.qual";
-               outputNames.push_back(scrapQualFile);
+               if (qFileName != "") {  outputNames.push_back(trimQualFile); outputNames.push_back(scrapQualFile);  }
                string groupFile = outputDir + m->getRootName(m->getSimpleName(fastaFile)) + "groups";
                
                vector<string> fastaFileNames;