1.19.0

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index f685a427d4dfc87d92e45b4aa82342bfd6ff3d16..d8a0d1d00aaf58768d887134ffb29aa3d4e5275c 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -497,7 +497,7 @@ int TrimSeqsCommand::driverCreateTrim(string filename, string qFileName, string
                        int currentSeqsDiffs = 0;
 
                        Sequence currSeq(inFASTA); m->gobble(inFASTA);
-
+                       
                        QualityScores currQual;
                        if(qFileName != ""){
                                currQual = QualityScores(qFile);  m->gobble(qFile);
@@ -546,7 +546,7 @@ int TrimSeqsCommand::driverCreateTrim(string filename, string qFileName, string
                                        else if(qRollAverage != 0)      {       success = currQual.stripQualRollingAverage(currSeq, qRollAverage);      }
                                        else if(qWindowAverage != 0){   success = currQual.stripQualWindowAverage(currSeq, qWindowStep, qWindowSize, qWindowAverage);   }
                                        else                                            {       success = 1;                            }
-                                       
+                               
                                        //you don't want to trim, if it fails above then scrap it
                                        if ((!qtrim) && (origLength != currSeq.getNumBases())) {  success = 0; }