removed various build warnings

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 20002049ce986b01f5395ed2b807471cf954133f..d5df4730c9f118966de5f3514b4ec276faffce05 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -455,7 +455,7 @@ int TrimSeqsCommand::driverCreateTrim(string filename, string qFileName, string
        try {
                
                ofstream outFASTA;
-               int able = m->openOutputFile(trimFile, outFASTA);
+               m->openOutputFile(trimFile, outFASTA);
                
                ofstream scrapFASTA;
                m->openOutputFile(scrapFile, scrapFASTA);
@@ -1095,7 +1095,6 @@ int TrimSeqsCommand::stripBarcode(Sequence& seq, QualityScores& qual, int& group
                                oligo = oligo.substr(0,alnLength);
                                temp = temp.substr(0,alnLength);
                                
-                               int newStart=0;
                                int numDiff = countDiffs(oligo, temp);
                                
 //                             cout << oligo << '\t' << temp << '\t' << numDiff << endl;                               
@@ -1220,7 +1219,6 @@ int TrimSeqsCommand::stripForward(Sequence& seq, QualityScores& qual, int& group
                                oligo = oligo.substr(0,alnLength);
                                temp = temp.substr(0,alnLength);
                                
-                               int newStart=0;
                                int numDiff = countDiffs(oligo, temp);
                                
 //                             cout << oligo << '\t' << temp << '\t' << numDiff << endl;