added getCommandInfoCommand for gui

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 9ff75df7dc98571ec8585f50ff4cf3de0b4f5fed..b5393a3a5ba16caec3b89c1eee6906098e95c6a1 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -80,7 +80,7 @@ string TrimSeqsCommand::getHelpString(){
                helpString += "maxhomop=yourMaxhomop, minlength=youMinlength, maxlength=yourMaxlength)  \n";    
                helpString += "Example trim.seqs(fasta=abrecovery.fasta, flip=..., oligos=..., maxambig=..., maxhomop=..., minlength=..., maxlength=...).\n";
                helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n";
-               helpString += "For more details please check out the wiki http://www.mothur.org/wiki/Trim.seqs .\n\n";
+               helpString += "For more details please check out the wiki http://www.mothur.org/wiki/Trim.seqs .\n";
                return helpString;
        }
        catch(exception& e) {
@@ -583,7 +583,7 @@ int TrimSeqsCommand::driverCreateTrim(string filename, string qFileName, string
                                        
                                        if(barcodes.size() != 0){
                                                string thisGroup = barcodeNameVector[barcodeIndex];
-                                               if (primers.size() != 0) {  if (primerNameVector[primerIndex] != "") { thisGroup += "." + primerNameVector[primerIndex]; } }
+                                               if (primers.size() != 0) { thisGroup += "." + primerNameVector[primerIndex]; }
                                                
                                                outGroupsFile << currSeq.getName() << '\t' << thisGroup << endl;