added checks to make sure windows processes completed their tasks.

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 53084078f3d4c079773a4e1cb73ebb1774726b37..b208209e2a808a0f92cca9f160f4da456450e153 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -1152,6 +1152,9 @@ int TrimSeqsCommand::createProcessesCreateTrim(string filename, string qFileName
                
                //Close all thread handles and free memory allocations.
                for(int i=0; i < pDataArray.size(); i++){
+            if (pDataArray[i]->count != pDataArray[i]->lineEnd) {
+                m->mothurOut("[ERROR]: process " + toString(i) + " only processed " + toString(pDataArray[i]->count) + " of " + toString(pDataArray[i]->lineEnd) + " sequences assigned to it, quitting. \n"); m->control_pressed = true;
+            }
                        for (map<string, int>::iterator it = pDataArray[i]->groupCounts.begin(); it != pDataArray[i]->groupCounts.end(); it++) {
                 map<string, int>::iterator it2 = groupCounts.find(it->first);
                 if (it2 == groupCounts.end()) {        groupCounts[it->first] = it->second; }