working on testing

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 3c1367a17eadd176edf05078c46b4e4a398d4640..acdf475a17ccc544c96e6d519d58867cf50b3374 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -315,7 +315,7 @@ int TrimSeqsCommand::execute(){
                                
                                if (m->control_pressed) {  return 0; }
                #else
-                               driverCreateTrim(fastaFile, qFileName, trimSeqFile, scrapSeqFile, trimQualFile, scrapQualFile, groupFile, fastaFileNames, qualFileNames, lines[0], qlines[0]);
+                               driverCreateTrim(fastaFile, qFileName, trimSeqFile, scrapSeqFile, trimQualFile, scrapQualFile, groupFile, fastaFileNames, qualFileNames, lines[0], qLines[0]);
                                
                                for (int j = 0; j < fastaFileNames.size(); j++) {
                                        rename((fastaFileNames[j] + toString(j) + ".temp").c_str(), fastaFileNames[j].c_str());