pat's mods to morisitahorn and pre.cluster

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index f7773244bc37d888d4c44818cdd8dd1d020444ba..a6950aca22d383fdba9dde8d719d0430e62e32d4 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -185,15 +185,17 @@ int TrimSeqsCommand::execute(){
                                        }
                                        if(!success)                    {       trashCode += 'q';                                                               }
                                }
+                               
                                if(barcodes.size() != 0){
-                                       
                                        success = stripBarcode(currSeq, group);
                                        if(!success){   trashCode += 'b';       }
                                }
+                               
                                if(numFPrimers != 0){
                                        success = stripForward(currSeq);
                                        if(!success){   trashCode += 'f';       }
                                }
+                               
                                if(numRPrimers != 0){
                                        success = stripReverse(currSeq);
                                        if(!success){   trashCode += 'r';       }