worked on trim.seqs

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 29fdc6365dbd9727754135efbd6c93d78e26629e..a544733375b004e651409ef47c9db62bb0f0756d 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -604,7 +604,7 @@ void TrimSeqsCommand::getOligos(vector<string>& outFASTAVec){ //vector<ofstream*
 }
 //***************************************************************************************************************
 
-bool TrimSeqsCommand::stripBarcode(Sequence& seq, int& group){
+int TrimSeqsCommand::stripBarcode(Sequence& seq, int& group){
        try {
                string rawSequence = seq.getUnaligned();
                bool success = bdiffs + 1;      //guilty until proven innocent
@@ -722,7 +722,7 @@ bool TrimSeqsCommand::stripBarcode(Sequence& seq, int& group){
 
 //***************************************************************************************************************
 
-bool TrimSeqsCommand::stripForward(Sequence& seq){
+int TrimSeqsCommand::stripForward(Sequence& seq){
        try {
                string rawSequence = seq.getUnaligned();
                bool success = pdiffs + 1;      //guilty until proven innocent