small bug with trimming of quality scores over a window. lost last base if sequence...

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 082bc7950c590d9251100c3a6cb45dd18af6d2aa..a2c8021a57f6f3f076c8d1c9be7353eb8cffff93 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -604,7 +604,7 @@ int TrimSeqsCommand::driverCreateTrim(string filename, string qFileName, string
                                        else if(qRollAverage != 0)      {       success = currQual.stripQualRollingAverage(currSeq, qRollAverage);      }
                                        else if(qWindowAverage != 0){   success = currQual.stripQualWindowAverage(currSeq, qWindowStep, qWindowSize, qWindowAverage);   }
                                        else                                            {       success = 1;                            }
-                               
+                                       
                                        //you don't want to trim, if it fails above then scrap it
                                        if ((!qtrim) && (origLength != currSeq.getNumBases())) {  success = 0; }