fixed bug in cluster.split

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 705ac25f5a5e727424a2567a0d358b4c1dc951e5..71e5c9277af61fef9884f42b2c8e9d54a2796e12 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -163,7 +163,7 @@ void TrimSeqsCommand::help(){
                m->mothurOut("The trim.seqs command reads a fastaFile and creates .....\n");
                m->mothurOut("The trim.seqs command parameters are fasta, flip, oligos, maxambig, maxhomop, minlength, maxlength, qfile, qthreshold, qaverage, diffs, qtrim and allfiles.\n");
                m->mothurOut("The fasta parameter is required.\n");
-               m->mothurOut("The flip parameter .... The default is 0.\n");
+               m->mothurOut("The flip parameter will output the reverse compliment of your trimmed sequence. The default is false.\n");
                m->mothurOut("The oligos parameter .... The default is "".\n");
                m->mothurOut("The maxambig parameter .... The default is -1.\n");
                m->mothurOut("The maxhomop parameter .... The default is 0.\n");