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[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index ae37a2a421ab7e81ca0f973e3a10ca2b00bef327..6d87f89c88b1055e033f3cce1cc18e0700377ff1 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -798,7 +798,7 @@ int TrimSeqsCommand::createProcessesCreateTrim(string filename, string qFileName
 
 int TrimSeqsCommand::setLines(string filename, string qfilename, vector<unsigned long int>& fastaFilePos, vector<unsigned long int>& qfileFilePos) {
        try {
-               
+               #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
                //set file positions for fasta file
                fastaFilePos = m->divideFile(filename, processors);
                
@@ -871,6 +871,40 @@ int TrimSeqsCommand::setLines(string filename, string qfilename, vector<unsigned
                qfileFilePos.push_back(size);
                
                return processors;
+               
+               #else
+               
+                       fastaFilePos.push_back(0); qfileFilePos.push_back(0);
+                       //get last file position of fastafile
+                       FILE * pFile;
+                       unsigned long int size;
+                       
+                       //get num bytes in file
+                       pFile = fopen (filename.c_str(),"rb");
+                       if (pFile==NULL) perror ("Error opening file");
+                       else{
+                               fseek (pFile, 0, SEEK_END);
+                               size=ftell (pFile);
+                               fclose (pFile);
+                       }
+                       fastaFilePos.push_back(size);
+                       
+                       //get last file position of fastafile
+                       FILE * qFile;
+                       
+                       //get num bytes in file
+                       qFile = fopen (qfilename.c_str(),"rb");
+                       if (qFile==NULL) perror ("Error opening file");
+                       else{
+                               fseek (qFile, 0, SEEK_END);
+                               size=ftell (qFile);
+                               fclose (qFile);
+                       }
+                       qfileFilePos.push_back(size);
+               
+                       return 1;
+               
+               #endif
        }
        catch(exception& e) {
                m->errorOut(e, "TrimSeqsCommand", "setLines");