sped up unifrac weighted.

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 8a767f696415737284491fa691a708dd1c011573..3c1367a17eadd176edf05078c46b4e4a398d4640 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -429,7 +429,7 @@ int TrimSeqsCommand::driverCreateTrim(string filename, string qFileName, string
                vector<ofstream*> fastaFileNames;
                vector<ofstream*> qualFileNames;
                
-               
+       cout << "here" << endl; 
                if (oligoFile != "") {          
                        m->openOutputFile(groupFile, outGroups);   
                        for (int i = 0; i < fastaNames.size(); i++) {
@@ -446,17 +446,17 @@ int TrimSeqsCommand::driverCreateTrim(string filename, string qFileName, string
                        #endif
                        }
                }
-               
+cout << "here " << filename << endl;           
                ifstream inFASTA;
                m->openInputFile(filename, inFASTA);
                inFASTA.seekg(line->start);
-               
+       cout << "here " << qFileName << endl;   
                ifstream qFile;
                if(qFileName != "")     {       m->openInputFile(qFileName, qFile);     qFile.seekg(qline->start);  }
                
                bool done = false;
                int count = 0;
-       
+       cout << "here" << endl;
                while (!done) {
                                
                        if (m->control_pressed) {