added N code to flow data. removed changed for trimming of fast=T in trim.flows.

[mothur.git] / trimoligos.h

diff --git a/trimoligos.h b/trimoligos.h
index df4643c87f1d5b7edd75c5384e7ff2a144a392c7..f3e695406d44a880ed2adc0029e730b6502185fc 100644 (file)
--- a/trimoligos.h
+++ b/trimoligos.h
@@ -56,11 +56,13 @@ class TrimOligos {
         bool findReverse(Sequence&, int&, int&);
     
         string reverseOligo(string);
+        string getTrashCode() { return trashCode; }
                                
        
        private:
                int pdiffs, bdiffs, ldiffs, sdiffs;
         bool paired;
+        string trashCode;
        
                map<string, int> barcodes;
                map<string, int> primers;