added ':' name check to seq. error and fastq.info. sffinfo now ignores clipQualRight...

[mothur.git] / trimoligos.h

diff --git a/trimoligos.h b/trimoligos.h
index 8aa44bdd365356f195069e4f11528300844fbc7a..d72b8146d36bc659ec13ddffc28463ef4a7b8204 100644 (file)
--- a/trimoligos.h
+++ b/trimoligos.h
@@ -50,6 +50,11 @@ class TrimOligos {
     
         bool stripSpacer(Sequence&);
         bool stripSpacer(Sequence&, QualityScores&);
+    
+        //seq, primerStart, primerEnd
+        bool findForward(Sequence&, int&, int&);
+        bool findReverse(Sequence&, int&, int&);
+    
                                
        
        private: