Merge remote-tracking branch 'mothur/master'

[mothur.git] / trimflowscommand.h

diff --git a/trimflowscommand.h b/trimflowscommand.h
index 2594815f6b763a303382f9730bce36e84060b713..27bafd530cad4a66ef22e41696eef7e2328bde97 100644 (file)
--- a/trimflowscommand.h
+++ b/trimflowscommand.h
@@ -59,7 +59,9 @@ private:
        bool allFiles;
        int processors;
        int numFPrimers, numRPrimers;
-       int maxFlows, minFlows, minLength, maxLength, maxHomoP, tdiffs, bdiffs, pdiffs, sdiffs, ldiffs, numLinkers, numSpacers;
+    int numLinkers, numSpacers;
+
+    int maxFlows, minFlows, minLength, maxLength, maxHomoP, tdiffs, bdiffs, pdiffs;
        int numFlows;
        float signal, noise;
        bool fasta;
@@ -67,7 +69,6 @@ private:
        
        string flowFileName, oligoFileName, outputDir;
 
-
        map<string, int> barcodes;
        map<string, int> primers;
        vector<string> revPrimer;