Pat's fix

[mothur.git] / trimflowscommand.h

diff --git a/trimflowscommand.h b/trimflowscommand.h
index 0dc1cd977c9b106b4986e2cb839939cae7541db2..8656fd0b5b314084c6fd08cf614288aca2bbc763 100644 (file)
--- a/trimflowscommand.h
+++ b/trimflowscommand.h
@@ -58,7 +58,9 @@ private:
        bool allFiles;
        int processors;
        int numFPrimers, numRPrimers;
-       int maxFlows, minFlows, minLength, maxLength, maxHomoP, tdiffs, bdiffs, pdiffs;
+    int numLinkers, numSpacers;
+
+    int maxFlows, minFlows, minLength, maxLength, maxHomoP, tdiffs, bdiffs, pdiffs;
        int numFlows;
        float signal, noise;
        bool fasta;
@@ -66,7 +68,6 @@ private:
        
        string flowFileName, oligoFileName, outputDir;
 
-
        map<string, int> barcodes;
        map<string, int> primers;
        vector<string> revPrimer;