Pat's testing

[mothur.git] / trimflowscommand.cpp

diff --git a/trimflowscommand.cpp b/trimflowscommand.cpp
index 77dacfe711ea694d7d81cb7536fd15d14cb0ec97..6a26fac949a335999be1cf7c1355f9c5c4f7d48c 100644 (file)
--- a/trimflowscommand.cpp
+++ b/trimflowscommand.cpp
@@ -198,6 +198,8 @@ TrimFlowsCommand::TrimFlowsCommand(string option)  {
 
                        numFPrimers = 0;
                        numRPrimers = 0;
+            numLinkers = 0;
+            numSpacers = 0;
                }
                
        }
@@ -382,7 +384,6 @@ int TrimFlowsCommand::driverCreateTrim(string flowFileName, string trimFlowFileN
                
                while(moreSeqs) {
                        //cout << "driver " << count << endl;
-                       
        
                        if (m->control_pressed) { break; }