changed int to pid_t type in fork(). roughed in get.mimarkscommand.

[mothur.git] / trimflowscommand.cpp

diff --git a/trimflowscommand.cpp b/trimflowscommand.cpp
index 33349decab52e90be19c928b44b9b07c8f6c710a..5800cde2146f108ae6efc3d1bce50b9bb9913750 100644 (file)
--- a/trimflowscommand.cpp
+++ b/trimflowscommand.cpp
@@ -825,7 +825,7 @@ int TrimFlowsCommand::createProcessesCreateTrim(string flowFileName, string trim
                
                //loop through and create all the processes you want
                while (process != processors) {
-                       int pid = fork();
+                       pid_t pid = fork();
                        
                        if (pid > 0) {
                                processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
@@ -837,7 +837,7 @@ int TrimFlowsCommand::createProcessesCreateTrim(string flowFileName, string trim
                                        for(int i=0;i<tempBarcodePrimerComboFileNames.size();i++){
                                                for(int j=0;j<tempBarcodePrimerComboFileNames[0].size();j++){
                             if (tempBarcodePrimerComboFileNames[i][j] != "") {
-                                tempBarcodePrimerComboFileNames[i][j] += toString(getpid()) + ".temp";
+                                tempBarcodePrimerComboFileNames[i][j] += m->mothurGetpid(process) + ".temp";
                                 ofstream temp;
                                 m->openOutputFile(tempBarcodePrimerComboFileNames[i][j], temp);
                                 temp.close();
@@ -846,9 +846,9 @@ int TrimFlowsCommand::createProcessesCreateTrim(string flowFileName, string trim
                                        }
                                }
                                driverCreateTrim(flowFileName,
-                                                                (trimFlowFileName + toString(getpid()) + ".temp"),
-                                                                (scrapFlowFileName + toString(getpid()) + ".temp"),
-                                                                (fastaFileName + toString(getpid()) + ".temp"),
+                                                                (trimFlowFileName + m->mothurGetpid(process) + ".temp"),
+                                                                (scrapFlowFileName + m->mothurGetpid(process) + ".temp"),
+                                                                (fastaFileName + m->mothurGetpid(process) + ".temp"),
                                                                 tempBarcodePrimerComboFileNames, lines[process]);
 
                                exit(0);