re-wrote co-occurrence command

[mothur.git] / trialswap2.h

diff --git a/trialswap2.h b/trialswap2.h
index 6e68e95d440c22b3d63a0040aad5f9c3d51ef6ae..027c946c157e200e3e63859ee27b8607ba42ab88 100644 (file)
--- a/trialswap2.h
+++ b/trialswap2.h
@@ -23,21 +23,9 @@ public:
     double calc_pvalue_greaterthan (vector<double>, double);
     int swap_checkerboards (vector<vector<int> > &);
     int calc_combo (vector<vector<int> > &);
-    double calc_vratio (vector<int>, vector<int>);
-    int calc_checker (vector<vector<int> > &,vector<int>);
-    double calc_c_score (vector<vector<int> > &,vector<int>);
-    
-    int sim1 (vector<vector<int> > &);
-    void sim2(vector<vector<int> >&);
-    int sim2plus(vector<int>, vector<vector<int> > &);
-    void sim3(vector<vector<int> > &);
-    int sim4(vector<int>, vector<int>, vector<vector<int> > &);
-    int sim5(vector<int>, vector<int>, vector<vector<int> > &);
-    int sim6(vector<int>, vector<vector<int> > &);
-    int sim7(vector<int>, vector<vector<int> > &);
-    int sim8(vector<int>, vector<int>, vector<vector<int> > &);
-    int transpose_matrix (vector<vector<int> > &, vector<vector<int> > &);
-    int update_row_col_totals(vector<vector<int> > &, vector<int>&, vector<int>&);
+    double calc_vratio (int, int, vector<int>, vector<int>);
+    int calc_checker (vector<vector<int> > &, vector<int>, int, int);
+    double calc_c_score (vector<vector<int> > &, vector<int>, int, int);
 
     
 private: