moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / treereader.h

diff --git a/treereader.h b/treereader.h
deleted file mode 100644 (file)
index fb9c791..0000000
--- a/treereader.h
+++ /dev/null
@@ -1,44 +0,0 @@
-#ifndef Mothur_treereader_h
-#define Mothur_treereader_h
-
-//
-//  treereader.h
-//  Mothur
-//
-//  Created by Sarah Westcott on 4/11/12.
-//  Copyright (c) 2012 Schloss Lab. All rights reserved.
-//
-
-#include "mothurout.h"
-#include "tree.h"
-
-class TreeReader {
-    
-public:
-    
-    TreeReader(string tf);
-       TreeReader(string tf, string gf);
-    TreeReader(string tf, string gf, string nf);
-       ~TreeReader() {}        
-    
-    vector<Tree*> getTrees()            { return trees;     }
-    map<string, string> getNames()      { return nameMap;   } //dups -> unique
-    map<string, string> getNameMap()    { return names;     } //unique -> dups list
-    
-    
-private:
-    MothurOut* m;
-       vector<Tree*> trees;
-    TreeMap* tmap;
-    map<string, string> nameMap; //dupName -> uniqueName
-    map<string, string> names;
-    
-    string treefile, groupfile, namefile;
-    
-    bool readTrees();
-    int readNamesFile();
-};
-
-
-
-#endif