added logfile feature

[mothur.git] / treenode.cpp

diff --git a/treenode.cpp b/treenode.cpp
index fc6ea3a595ac752e943151a84ce6a538f6d66670..54cdae4e502250229a6e70e5ce937a631a843b1e 100644 (file)
--- a/treenode.cpp
+++ b/treenode.cpp
@@ -60,31 +60,27 @@ int Node::getIndex() { return vectorIndex; }
 //to be used by printTree in the Tree class to print the leaf info                     
 void Node::printNode() {
        try{
-               cout << parent << ' ' << lchild << ' ' << rchild << ' ' << group;
+               mothurOut(toString(parent) + " " + toString(lchild) + " " + toString(rchild) + " " + group);
                //there is a branch length
                if (branchLength != -1) { 
-                       cout << ' ' << setprecision(4) << branchLength; 
+                       mothurOut(" " + toString(branchLength)); 
                }
-               cout << " |";
+               mothurOut(" |");
                map<string, int>::iterator it;
                for(it=pGroups.begin();it!=pGroups.end();it++){
-                       cout << ' ' << it->first << ':' << it->second;
+                       mothurOut(" " + it->first + ":" + toString(it->second));
                }
-               cout << " |";
+               mothurOut(" |");
                for(it=pcount.begin();it!=pcount.end();it++){
-                       cout << ' ' << it->first << ':' << it->second;
+                       mothurOut(" " + it->first + ":" + toString(it->second));
                }
-               cout << endl; 
+               mothurOutEndLine();
                
                
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the Node class Function printNode. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "Node", "printNode");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the Node class function printNode. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }               
 }
 /****************************************************************/