changing command name classify.shared to classifyrf.shared

[mothur.git] / treenode.cpp

diff --git a/treenode.cpp b/treenode.cpp
index 648707ab246725ce6f36e912d9b8509024e362b7..0131f59c340ef30eeeeb56ed2a96fc2dc258b808 100644 (file)
--- a/treenode.cpp
+++ b/treenode.cpp
@@ -12,6 +12,7 @@
 
 /****************************************************************/     
 Node::Node() {
+       m = MothurOut::getInstance();
        //initialize node
        name = "";
        branchLength = -1;
@@ -60,30 +61,30 @@ int Node::getIndex() { return vectorIndex; }
 //to be used by printTree in the Tree class to print the leaf info                     
 void Node::printNode() {
        try{
-               mothurOut(toString(parent) + " " + toString(lchild) + " " + toString(rchild) + " ");
+               m->mothurOut(name + " " + toString(parent) + " " + toString(lchild) + " " + toString(rchild) + " ");
                
-               for (int i = 0; i < group.size(); i++) {  mothurOut( group[i] + " "); }
+               /*for (int i = 0; i < group.size(); i++) {  m->mothurOut( group[i] + " "); }
                
                //there is a branch length
                if (branchLength != -1) { 
-                       mothurOut(" " + toString(branchLength)); 
+                       m->mothurOut(" " + toString(branchLength)); 
                }
-               mothurOut(" |");
+               m->mothurOut(" |");
                
                map<string, int>::iterator it;
                for(it=pGroups.begin();it!=pGroups.end();it++){
-                       mothurOut(" " + it->first + ":" + toString(it->second));
+                       m->mothurOut(" " + it->first + ":" + toString(it->second));
                }
-               mothurOut(" |");
+               m->mothurOut(" |");
                for(it=pcount.begin();it!=pcount.end();it++){
-                       mothurOut(" " + it->first + ":" + toString(it->second));
-               }
-               mothurOutEndLine();
+                       m->mothurOut(" " + it->first + ":" + toString(it->second));
+               }*/
+               m->mothurOutEndLine();
                
                
        }
        catch(exception& e) {
-               errorOut(e, "Node", "printNode");
+               m->errorOut(e, "Node", "printNode");
                exit(1);
        }
 }