added multiple processors option for Windows users to align.seqs, dist.seqs, summary...

[mothur.git] / treemap.h

diff --git a/treemap.h b/treemap.h
index 244348ef1f52d3768a585e1960fd0d1b20424d49..7ed8d04f0886367f5a17a5baeec4848e75687358 100644 (file)
--- a/treemap.h
+++ b/treemap.h
@@ -37,7 +37,11 @@ public:
        void removeSeq(string);  //removes a sequence, this is to accomadate trees that do not contain all the seqs in your groupfile
        string getGroup(string);
        void addSeq(string, string);
-       vector<string> namesOfGroups;
+       void addGroup(string s) { setNamesOfGroups(s); }
+       vector<string> getNamesOfGroups() {
+               sort(namesOfGroups.begin(), namesOfGroups.end());
+               return namesOfGroups;
+       }
        vector<string> namesOfSeqs;
     map<string,int> seqsPerGroup;      //groupname, number of seqs in that group.
        map<string, GroupIndex> treemap; //sequence name and <groupname, vector index>
@@ -46,6 +50,7 @@ public:
        void makeSim(ListVector*);  //takes listvector info and fills treemap for use by tree.shared command.   
        
 private:
+       vector<string> namesOfGroups;
        ifstream fileHandle;
        string groupFileName;
        int numGroups;