added smart distance feature and optimized all commands using line by line processing

[mothur.git] / treegroupscommand.h

diff --git a/treegroupscommand.h b/treegroupscommand.h
index 3f145e92b4780fa4f40a45ed1849150dafffc800..989c699c877ead1e27ea20a1c59a53a901bfa71a 100644 (file)
--- a/treegroupscommand.h
+++ b/treegroupscommand.h
@@ -58,10 +58,13 @@ private:
        InputData* input;
        ValidCalculators* validCalculator;
        vector<SharedRAbundVector*> lookup;
+       vector<SharedRAbundVector*> lastLookup;
        string format, outputFile, groupNames, filename;
        int numGroups;
        ofstream out;
        float precision, cutoff;
+       //if the users enters label "0.06" and there is no "0.06" in their file use the next lowest label.
+       void process(vector<SharedRAbundVector*>);
 
 };