added hcluster command and fixed some bugs, namely one with smart distancing.

[mothur.git] / treegroupscommand.cpp

diff --git a/treegroupscommand.cpp b/treegroupscommand.cpp
index e15d56ba82268e2b5d8d95b4f5bb562df4c70868..c115c54ce1bcb39786ec7c54fcd4ba11df3115ab 100644 (file)
--- a/treegroupscommand.cpp
+++ b/treegroupscommand.cpp
@@ -443,6 +443,8 @@ void TreeGroupCommand::makeSimsShared() {
                        }
                        
                        if ((anyLabelsToProcess(lookup[0]->getLabel(), userLabels, "") == true) && (processedLabels.count(lastLabel) != 1)) {
+                               string saveLabel = lookup[0]->getLabel();
+                       
                                for (int i = 0; i < lookup.size(); i++) {  delete lookup[i];  } 
                                lookup = input->getSharedRAbundVectors(lastLabel);
 
@@ -451,6 +453,9 @@ void TreeGroupCommand::makeSimsShared() {
                                        
                                processedLabels.insert(lookup[0]->getLabel());
                                userLabels.erase(lookup[0]->getLabel());
+                               
+                               //restore real lastlabel to save below
+                               lookup[0]->setLabel(saveLabel);
                        }
 
                        lastLabel = lookup[0]->getLabel();