added bootstrap.shared command and fixed some bugs with heatmap

[mothur.git] / treegroupscommand.cpp

diff --git a/treegroupscommand.cpp b/treegroupscommand.cpp
index a6e1918ffdefcf34d6052730f5161d011d644567..6cc64feed9cb3b031b87ed9ea92bad616a362621 100644 (file)
--- a/treegroupscommand.cpp
+++ b/treegroupscommand.cpp
@@ -141,9 +141,9 @@ int TreeGroupCommand::execute(){
                                        for (int g = 0; g < numGroups; g++) {   index[g] = g;   }
                
                                        //create a new filename
-                                       outputFile = getRootName(globaldata->inputFileName) + treeCalculators[i]->getName() + "." + order->getLabel() + groupNames + ".tre";
+                                       outputFile = getRootName(globaldata->inputFileName) + treeCalculators[i]->getName() + "." + order->getLabel() + ".tre";
                                                        
-                                       for (int k = 0; k < lookup.size(); k++) { // pass cdd each set of groups to commpare
+                                       for (int k = 0; k < lookup.size(); k++) { 
                                                for (int l = k; l < lookup.size(); l++) {
                                                        if (k != l) { //we dont need to similiarity of a groups to itself
                                                                //get estimated similarity between 2 groups