fixes while testing

[mothur.git] / treegroupscommand.cpp

diff --git a/treegroupscommand.cpp b/treegroupscommand.cpp
index a36e599fb3b04c01d2651423382566a26e7ac6d7..64bcd36764e044a911295870025095016be7fcc3 100644 (file)
--- a/treegroupscommand.cpp
+++ b/treegroupscommand.cpp
@@ -34,6 +34,8 @@ vector<string> TreeGroupCommand::getValidParameters(){
 //**********************************************************************************************************************
 TreeGroupCommand::TreeGroupCommand(){  
        try {
+               abort = true;
+               globaldata = GlobalData::getInstance();
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["tree"] = tempOutNames;