fixed issue in tree.shared when shared file was not sorted

[mothur.git] / treegroupscommand.cpp

diff --git a/treegroupscommand.cpp b/treegroupscommand.cpp
index 90d336da38f57f70fa0f5ddb59125cc2099ec346..0d014599fa794217233694f8a28ed707b99c86eb 100644 (file)
--- a/treegroupscommand.cpp
+++ b/treegroupscommand.cpp
@@ -429,7 +429,10 @@ int TreeGroupCommand::execute(){
                        m->Treenames.clear();
                        
                        //fills globaldatas tree names
-                       m->Treenames = m->getGroups();
+                       //m->Treenames = m->getGroups();
+            for (int k = 0; k < lookup.size(); k++) {
+                m->Treenames.push_back(lookup[k]->getGroup());
+            }
                
                        if (m->control_pressed) { return 0; }
                        
@@ -463,7 +466,10 @@ int TreeGroupCommand::execute(){
 
                        list = readMatrix->getListVector();
                        SparseDistanceMatrix* dMatrix = readMatrix->getDMatrix();
-
+            
+            //clear globaldatas old tree names if any
+                       m->Treenames.clear();
+            
                        //make treemap
             if (ct != NULL) { delete ct; }
                        ct = new CountTable();
@@ -475,17 +481,12 @@ int TreeGroupCommand::execute(){
                 nameMap.insert(bin); 
                 gps.insert(bin); 
                 groupMap[bin] = bin;
+                m->Treenames.push_back(bin);
             }
             ct->createTable(nameMap, groupMap, gps);
                        
                        vector<string> namesGroups = ct->getNamesOfGroups();
                        m->setGroups(namesGroups);
-               
-                       //clear globaldatas old tree names if any
-                       m->Treenames.clear();
-            
-                       //fills globaldatas tree names
-                       m->Treenames = m->getGroups();
                        
                        //used in tree constructor 
                        m->runParse = false;