adding treeclimber and unifrac pieces

[mothur.git] / treecalculator.h

diff --git a/treecalculator.h b/treecalculator.h
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+#ifndef TREECALCULATOR_H
+#define TREECALCULATOR_H
+
+/*
+ *  treecalculator.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 1/26/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+using namespace std;
+
+#include <vector>
+#include <cmath>
+#include <math.h>
+#include <string>
+#include <map>
+#include <algorithm>
+#include "utilities.hpp"
+#include "tree.h"
+
+/* The tree calculator class is the parent class for tree calculators in mothur. */ 
+
+typedef vector<double> EstOutput;
+
+/***********************************************************************/
+
+class TreeCalculator {
+
+public:
+       TreeCalculator(){};
+       TreeCalculator(string n) : name(n) {};
+       ~TreeCalculator(){};
+       virtual EstOutput getValues(Tree*) = 0; 
+       
+       virtual string getName()                {       return name;    }
+               
+protected:
+       EstOutput data;
+       string name;
+
+};
+
+/***********************************************************************/
+
+#endif
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