fixed phylo.diversity

[mothur.git] / tree.cpp

diff --git a/tree.cpp b/tree.cpp
index a104477d0a90280a528d5cea4deb80ba2133ba09..dbb3f44403a124679f2e44f0de490faaacbc36ee 100644 (file)
--- a/tree.cpp
+++ b/tree.cpp
@@ -70,7 +70,7 @@ void Tree::addNamesToCounts() {
                                
                //go through each leaf and update its pcounts and pgroups
                
-               float A = clock();
+               //float A = clock();
 
                for (int i = 0; i < numLeaves; i++) {
 
@@ -137,8 +137,8 @@ void Tree::addNamesToCounts() {
                        }//end else
                }//end for              
                
-               float B = clock();
-               cout << "addNamesToCounts\t" << (B - A) / CLOCKS_PER_SEC << endl;       
+               //float B = clock();
+               //cout << "addNamesToCounts\t" << (B - A) / CLOCKS_PER_SEC << endl;     
 
        }
        catch(exception& e) {
@@ -175,7 +175,7 @@ void Tree::setIndex(string searchName, int index) {
 /*****************************************************************/
 int Tree::assembleTree() {
        try {
-               float A = clock();
+               //float A = clock();
 
                //if user has given a names file we want to include that info in the pgroups and pcount info.
                if(globaldata->names.size() != 0) {  addNamesToCounts();  }
@@ -187,8 +187,8 @@ int Tree::assembleTree() {
                        tree[i].pGroups = (mergeGroups(i));
                        tree[i].pcount = (mergeGcounts(i));
                }
-               float B = clock();
-               cout << "assembleTree\t" << (B-A) / CLOCKS_PER_SEC << endl;
+               //float B = clock();
+               //cout << "assembleTree\t" << (B-A) / CLOCKS_PER_SEC << endl;
                return 0;
        }
        catch(exception& e) {