added phylo.diversity command. added hard parameter to cluster, hcluster and read...

[mothur.git] / tree.cpp

diff --git a/tree.cpp b/tree.cpp
index 7da3cef3718502640d61377bccbaae0d8e4213d3..b6cfa0b2429a0e7a6c94f4f5ef5c36ad7f04f473 100644 (file)
--- a/tree.cpp
+++ b/tree.cpp
@@ -70,10 +70,11 @@ void Tree::addNamesToCounts() {
                                
                //go through each leaf and update its pcounts and pgroups
                for (int i = 0; i < numLeaves; i++) {
+
                        string name = tree[i].getName();
-                       
+               
                        map<string, string>::iterator itNames = globaldata->names.find(name);
-                       
+               
                        if (itNames == globaldata->names.end()) { m->mothurOut(name + " is not in your name file, please correct."); m->mothurOutEndLine(); exit(1);  }
                        else {
                                vector<string> dupNames;
@@ -131,8 +132,7 @@ void Tree::addNamesToCounts() {
                                tree[i].setGroup(nodeGroups);
                                
                        }//end else
-               }//end for
-                               
+               }//end for                                      
        }
        catch(exception& e) {
                m->errorOut(e, "Tree", "addNamesToCounts");