added zap method to classify.seqs and changed bayesian method name to wang.

[mothur.git] / taxonomynode.cpp

diff --git a/taxonomynode.cpp b/taxonomynode.cpp
new file mode 100755 (executable)
index 0000000..b90bda1
--- /dev/null
+++ b/taxonomynode.cpp
@@ -0,0 +1,72 @@
+/*
+ *  taxonomynode.cpp
+ *  
+ *
+ *  Created by Pat Schloss on 7/8/11.
+ *  Copyright 2011 Patrick D. Schloss. All rights reserved.
+ *
+ */
+
+/**************************************************************************************************/
+
+#include "taxonomynode.h"
+
+/**************************************************************************************************/
+
+TaxonomyNode::TaxonomyNode(string n, int l): name(n), level(l){
+    m = MothurOut::getInstance();
+       parent = -1;
+       numChildren = 0;
+       numSeqs = 0;
+}
+
+/**************************************************************************************************/
+
+void TaxonomyNode::setName(string n)                   {       name = n;                                       }
+
+/**************************************************************************************************/
+
+string TaxonomyNode::getName()                                 {       return name;                            }
+
+/**************************************************************************************************/
+
+void TaxonomyNode::setParent(int p)                            {       parent = p;                                     }
+
+/**************************************************************************************************/
+
+int TaxonomyNode::getParent()                                  {       return parent;                          }
+
+/**************************************************************************************************/
+
+void TaxonomyNode::makeChild(string c, int i)  {       children[c] = i;                        }
+
+
+/**************************************************************************************************/
+
+map<string, int> TaxonomyNode::getChildren()   {       return children;                        }
+
+/**************************************************************************************************/
+
+int TaxonomyNode::getChildIndex(string c){
+       map<string, int>::iterator it = children.find(c);
+       if(it != children.end())        {       return it->second;                      }
+       else                                            {       return -1;                                      }       
+}
+
+/**************************************************************************************************/
+
+int    TaxonomyNode::getNumKids()                                      {       return (int)children.size();            }
+
+/**************************************************************************************************/
+
+int    TaxonomyNode::getNumSeqs()                                      {       return numSeqs;                         }
+
+/**************************************************************************************************/
+
+void TaxonomyNode::setTotalSeqs(int n)                 {       totalSeqs = n;                          }
+
+/**************************************************************************************************/
+
+int TaxonomyNode::getLevel()                                   {       return level;                           }
+
+/**************************************************************************************************/