changed random forest output filename

[mothur.git] / taxonomyequalizer.h

diff --git a/taxonomyequalizer.h b/taxonomyequalizer.h
index e060c9e8e1f58e28b1eb083287e697a364c05268..191267c1a44833c69437b2f8dbbb616e7566cf60 100644 (file)
--- a/taxonomyequalizer.h
+++ b/taxonomyequalizer.h
@@ -23,7 +23,7 @@
 class TaxEqualizer  {
        
 public:
-       TaxEqualizer(string, int);
+       TaxEqualizer(string, int, string);
        ~TaxEqualizer() {};
        
        string getEqualizedTaxFile()    {       return equalizedFile;   }
@@ -31,7 +31,7 @@ public:
        
        
 private:
-       string equalizedFile, testTax;
+       string equalizedFile, testTax, outputDir;
        bool containsConfidence;
        int cutoff, highestLevel;
        map<string, int> seqLevels;  //maps name to level of taxonomy
@@ -39,7 +39,6 @@ private:
        int getHighestLevel(ifstream&);  //scans taxonomy file to find taxonomy with highest level
        void extendTaxonomy(string, string&, int);  //name, taxonomy, desired level
        void truncateTaxonomy(string, string&, int);  //name, taxonomy, desired level
-       void removeConfidences(string&);  //removes the confidence limits on the taxon 
        MothurOut* m;
        
 };