mothurOutEndLine();
}
- inTax.close();
- openInputFile(tfile, inTax);
+ inTax.close();
+ ifstream in;
+ openInputFile(tfile, in);
ofstream out;
equalizedFile = getRootName(tfile) + "equalized.taxonomy";
openOutputFile(equalizedFile, out);
string name, tax;
- while (inTax) {
- inTax >> name >> tax; gobble(inTax);
+ while (in) {
+ in >> name >> tax; gobble(in);
if (containsConfidence) { removeConfidences(tax); }
out << name << '\t' << tax << endl;
}
- inTax.close();
+ in.close();
out.close();
}