added [ERROR] flag if command aborts

[mothur.git] / systemcommand.h

diff --git a/systemcommand.h b/systemcommand.h
index 3b48642aeec3b1cb5e4fc9e1a24d152d09dccc94..55b772b71ddaa62767746d7543f61ae09a5b5e39 100644 (file)
--- a/systemcommand.h
+++ b/systemcommand.h
@@ -18,7 +18,7 @@ class SystemCommand : public Command {
        public:
        
                SystemCommand(string);  
-               SystemCommand() {}
+               SystemCommand() { abort = true; calledHelp = true; }
                ~SystemCommand(){}
                vector<string> getRequiredParameters();
                vector<string> getValidParameters();