major change to the tree class to use the count table class instead of tree map....

[mothur.git] / summarytaxcommand.h

diff --git a/summarytaxcommand.h b/summarytaxcommand.h
index 5f0630f66a03ba9f08a2dd4d2098808a513f0a3c..e8033e23c76837809aa7828389b9cbae13b9c639 100644 (file)
--- a/summarytaxcommand.h
+++ b/summarytaxcommand.h
@@ -11,6 +11,7 @@
  */
 
 #include "command.hpp"
+#include "counttable.h"
 
 /**************************************************************************************************/
 
@@ -33,7 +34,7 @@ class SummaryTaxCommand : public Command {
                
        private:
                bool abort;
-               string taxfile, outputDir, namefile, groupfile, refTaxonomy;
+               string taxfile, outputDir, namefile, groupfile, refTaxonomy, countfile;
                vector<string> outputNames;
                map<string, int> nameMap;
 };