moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / summarytaxcommand.h

diff --git a/summarytaxcommand.h b/summarytaxcommand.h
deleted file mode 100644 (file)
index b5bdab1..0000000
--- a/summarytaxcommand.h
+++ /dev/null
@@ -1,43 +0,0 @@
-#ifndef SUMMARYTAXCOMMAND_H
-#define SUMMARYTAXCOMMAND_H
-
-/*
- *  summarytaxcommand.h
- *  Mothur
- *
- *  Created by westcott on 9/23/11.
- *  Copyright 2011 Schloss Lab. All rights reserved.
- *
- */
-
-#include "command.hpp"
-
-/**************************************************************************************************/
-
-class SummaryTaxCommand : public Command {
-       public:
-               SummaryTaxCommand(string);
-               SummaryTaxCommand();
-               ~SummaryTaxCommand(){}
-               
-               vector<string> setParameters();
-               string getCommandName()                 { return "summary.tax";                 }
-               string getCommandCategory()             { return "Phylotype Analysis";          }
-               string getHelpString(); 
-               string getCitation() { return "http://www.mothur.org/wiki/Summary.tax"; }
-               string getDescription()         { return "summarize the taxonomies of a set of sequences"; }
-               
-               int execute(); 
-               void help() { m->mothurOut(getHelpString()); }  
-               
-       private:
-               bool abort;
-               string taxfile, outputDir, namefile, groupfile, refTaxonomy;
-               vector<string> outputNames;
-               map<string, int> nameMap;
-};
-
-/**************************************************************************************************/
-
-
-#endif