added distance option to summary.shared

[mothur.git] / summarysharedcommand.h

diff --git a/summarysharedcommand.h b/summarysharedcommand.h
index b99e0f037206496f788635fa7d8a6ce21958d56b..c0172645387d4846aca623d4bfbe7827ca08cd74 100644 (file)
--- a/summarysharedcommand.h
+++ b/summarysharedcommand.h
@@ -39,7 +39,7 @@ private:
        InputData* input;
        ValidCalculators* validCalculator;
        
-       bool abort, allLines, mult, all;
+       bool abort, allLines, mult, all, createPhylip;
        set<string> labels; //holds labels to be used
        string label, calc, groups;
        vector<string>  Estimators, Groups, outputNames;
@@ -47,7 +47,7 @@ private:
        string format, outputDir;
        int numGroups, processors;
        int process(vector<SharedRAbundVector*>, string, string);
-       int driver(vector<SharedRAbundVector*>, int, int, string, string);
+       int driver(vector<SharedRAbundVector*>, int, int, string, string, vector< vector<seqDist> >&);
 
 };