started shared utilities, updates to venn and heatmap added tree.groups command

[mothur.git] / summarysharedcommand.h

diff --git a/summarysharedcommand.h b/summarysharedcommand.h
index 248c1c8ecb81f2bbc069b25151c3908e05330907..9e4a8c87963289644f17a10ce07c3a55f7cfbb7b 100644 (file)
--- a/summarysharedcommand.h
+++ b/summarysharedcommand.h
@@ -17,6 +17,7 @@
 #include "readmatrix.hpp"
 #include "sharedlistvector.h"
 #include "validcalculator.h"
+#include "sharedutilities.h"
 
 /*The summary.shared() command
        The summary.shared command can only be executed after a successful read.shared command. 
@@ -43,18 +44,15 @@ public:
        int execute();
        
 private:
-       void getSharedVectors();
-       void setGroups();
-       
        GlobalData* globaldata;
        ReadMatrix* read;
+       SharedUtil* util;
        vector<Calculator*> sumCalculators;     
        InputData* input;
        ValidCalculators* validCalculator;
        SharedListVector* SharedList;
        SharedOrderVector* order;
        vector<SharedRAbundVector*> lookup;
-       SharedRAbundVector* shared1, shared2;
        string outputFileName, format;
        ofstream outputFileHandle;