removed line option

[mothur.git] / summarysharedcommand.h

diff --git a/summarysharedcommand.h b/summarysharedcommand.h
index 515c776716100358d9369e21ff2e400d4458101f..119a75c47438a85460b4b798501edbf0807569c0 100644 (file)
--- a/summarysharedcommand.h
+++ b/summarysharedcommand.h
@@ -17,23 +17,8 @@
 #include "readotu.h"
 #include "validcalculator.h"
 
-
-/*The summary.shared() command
-       The summary.shared command can only be executed after a successful read.shared command. 
-       It outputs a file for each estimator you choose to use.  The summary.shared command parameters are label, 
-       line and sharedsummary.  No parameters are required, but you may not use both the line and label parameters at the same time.  
-       The summary.shared command should be in the following format: summary.shared(label=yourLabel, 
-       line=yourLines, sharedsummary=yourEstimators).  
-       Example summary.shared(label=unique-.01-.03, line=0,5,10, sharedsummary=sharedChao-sharedAce-sharedJabund
-       -sharedSorensonAbund-sharedJclass-sharedSorClass-sharedJest-sharedSorEst-SharedThetaYC-SharedThetaN).  
-       The default value for sharedsummary is sharedChao-sharedAce-sharedJabund-sharedSorensonAbund-sharedJclass-sharedSorClass-sharedJest-sharedSorEst-SharedThetaYC-SharedThetaN. 
-       The valid sharedsummary estimators are: sharedChao-sharedAce-sharedJabund-sharedSorensonAbund-sharedJclass-sharedSorClass
-       -sharedJest-sharedSorEst-SharedThetaYC-SharedThetaN.  The label and line parameters are used to analyze specific lines in your input. */
-
-
 class GlobalData;
 
-
 class SummarySharedCommand : public Command {
 
 public:
@@ -53,9 +38,8 @@ private:
        map<string, string> parameters;
        map<string, string>::iterator it;
        bool abort, allLines, mult;
-       set<int> lines; //hold lines to be used
        set<string> labels; //holds labels to be used
-       string line, label, calc, groups;
+       string label, calc, groups;
        vector<string>  Estimators, Groups;
        vector<SharedRAbundVector*> lookup;
        string outputFileName, format, outAllFileName;