forced rarefaction.single to output ending line for all groups. added subsample...

[mothur.git] / summarysharedcommand.h

diff --git a/summarysharedcommand.h b/summarysharedcommand.h
index fbfea7bd98fac33bb8570934b6bcd9e9d99ceaba..99ed5d039c9e95e6404731d092b81c2f824a0309 100644 (file)
--- a/summarysharedcommand.h
+++ b/summarysharedcommand.h
@@ -84,15 +84,16 @@ private:
        vector<Calculator*> sumCalculators;     
        InputData* input;
        
-       bool abort, allLines, mult, all, createPhylip;
+       bool abort, allLines, mult, all, createPhylip, subsample;
        set<string> labels; //holds labels to be used
-       string label, calc, groups, sharedfile;
+       string label, calc, groups, sharedfile, output;
        vector<string>  Estimators, Groups, outputNames;
        vector<SharedRAbundVector*> lookup;
        string format, outputDir;
-       int numGroups, processors;
+       int numGroups, processors, subsampleSize, iters;
        int process(vector<SharedRAbundVector*>, string, string);
        int driver(vector<SharedRAbundVector*>, int, int, string, string, vector< vector<seqDist> >&);
+    int printSims(ostream&, vector< vector<double> >&);
 
 };