added modify names parameter to set.dir

[mothur.git] / summarysharedcommand.cpp

diff --git a/summarysharedcommand.cpp b/summarysharedcommand.cpp
index 9893ea747a1a58799280b259c0950f47837b1af7..d93fb6e775392b5436b6dadbb99c88761e862de8 100644 (file)
--- a/summarysharedcommand.cpp
+++ b/summarysharedcommand.cpp
@@ -703,7 +703,7 @@ int SummarySharedCommand::process(vector<SharedRAbundVector*> thisLookup, string
                 
                 vector<summarySharedData*> pDataArray; 
                 DWORD   dwThreadIdArray[processors-1];
-                HANDLE  hThreadArray[processors-1]; 
+                HANDLE  hThreadArray[processors-1];
                 
                 //Create processor worker threads.
                 for( int i=1; i<processors; i++ ){
@@ -716,6 +716,7 @@ int SummarySharedCommand::process(vector<SharedRAbundVector*> thisLookup, string
                         temp->setGroup(thisLookup[k]->getGroup());
                         newLookup.push_back(temp);
                     }
+                
                     
                     //for each bin
                     for (int k = 0; k < thisLookup[0]->getNumBins(); k++) {
@@ -742,6 +743,9 @@ int SummarySharedCommand::process(vector<SharedRAbundVector*> thisLookup, string
                 
                 //Close all thread handles and free memory allocations.
                 for(int i=0; i < pDataArray.size(); i++){
+                    if (pDataArray[i]->count != (pDataArray[i]->end-pDataArray[i]->start)) {
+                        m->mothurOut("[ERROR]: process " + toString(i) + " only processed " + toString(pDataArray[i]->count) + " of " + toString(pDataArray[i]->end-pDataArray[i]->start) + " groups assigned to it, quitting. \n"); m->control_pressed = true; 
+                    }
                     m->appendFiles((sumFileName + toString(processIDS[i]) + ".temp"), sumFileName);
                     m->mothurRemove((sumFileName + toString(processIDS[i]) + ".temp"));