added multiple processors option for Windows users to align.seqs, dist.seqs, summary...

[mothur.git] / summarysharedcommand.cpp

diff --git a/summarysharedcommand.cpp b/summarysharedcommand.cpp
index 77db937c6bfb325bdcb133848103d14b639155fe..c8d112fd3031d4995e4675a3dbe3d4daf91aebf9 100644 (file)
--- a/summarysharedcommand.cpp
+++ b/summarysharedcommand.cpp
@@ -194,7 +194,7 @@ SummarySharedCommand::SummarySharedCommand(string option)  {
                        if (groups == "not found") { groups = ""; }
                        else { 
                                m->splitAtDash(groups, Groups);
-                               m->Groups = Groups;
+                               m->setGroups(Groups);
                        }
                        
                        string temp = validParameter.validFile(parameters, "all", false);                               if (temp == "not found") { temp = "false"; }
@@ -380,7 +380,7 @@ int SummarySharedCommand::execute(){
                        delete input;
                        for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; }
                        for(int i=0;i<sumCalculators.size();i++){  delete sumCalculators[i]; }
-                       m->Groups.clear(); 
+                       m->clearGroups(); 
                        return 0;
                }
                /******************************************************/
@@ -388,7 +388,7 @@ int SummarySharedCommand::execute(){
                
                /******************************************************/
                //comparison breakup to be used by different processes later
-               numGroups = m->Groups.size();
+               numGroups = m->getNumGroups();
                lines.resize(processors);
                for (int i = 0; i < processors; i++) {
                        lines[i].start = int (sqrt(float(i)/float(processors)) * numGroups);
@@ -408,7 +408,7 @@ int SummarySharedCommand::execute(){
                                delete input; 
                                for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; }
                                for(int i=0;i<sumCalculators.size();i++){  delete sumCalculators[i]; }
-                               m->Groups.clear(); 
+                               m->clearGroups(); 
                                return 0;
                        }
 
@@ -450,7 +450,7 @@ int SummarySharedCommand::execute(){
                        m->mothurRemove(outputFileName); 
                        delete input; 
                        for(int i=0;i<sumCalculators.size();i++){  delete sumCalculators[i]; }
-                       m->Groups.clear(); 
+                       m->clearGroups(); 
                        return 0;
                }
 
@@ -479,7 +479,7 @@ int SummarySharedCommand::execute(){
                
                                
                //reset groups parameter
-               m->Groups.clear();  
+               m->clearGroups();  
                
                for(int i=0;i<sumCalculators.size();i++){  delete sumCalculators[i]; }
                delete input;