fixes while testing 1.33.0

[mothur.git] / summaryqualcommand.h

diff --git a/summaryqualcommand.h b/summaryqualcommand.h
index 49583b059f5380ce049ac759dd94d8d25b1c7193..b9edc5148ca5f7a834433815204b40f9ea317db4 100644 (file)
--- a/summaryqualcommand.h
+++ b/summaryqualcommand.h
@@ -66,7 +66,7 @@ struct seqSumQualData {
        string filename; 
        unsigned long long start;
        unsigned long long end;
-       int count;
+       int count, numSeqs;
        MothurOut* m;
     bool hasNameMap;
        map<string, int> nameMap;
@@ -101,7 +101,8 @@ static DWORD WINAPI MySeqSumQualThreadFunction(LPVOID lpParam){
                        in.seekg(pDataArray->start-1); pDataArray->m->gobble(in); 
                }
                
-               int count = 0;
+               pDataArray->count = 0;
+        pDataArray->numSeqs = 0;
                for(int i = 0; i < pDataArray->end; i++){ //end is the number of sequences to process
                                
                        if (pDataArray->m->control_pressed) { in.close(); pDataArray->count = 1; return 1; }
@@ -138,11 +139,11 @@ static DWORD WINAPI MySeqSumQualThreadFunction(LPVOID lpParam){
                                        else { pDataArray->scores.at(i)[thisScores[i]] += num; }  
                                }
                                
-                               count += num;
+                               pDataArray->numSeqs += num;
+                pDataArray->count++;
                        }
                }
                
-               pDataArray->count = count;
                in.close();
                
                return 0;