added unix to ifdefs. minor changes while testing 1.24.0.

[mothur.git] / summaryqualcommand.cpp

diff --git a/summaryqualcommand.cpp b/summaryqualcommand.cpp
index a0d786f47518290bd71b88d15f386326d61acd64..5c175106ecb2584d07ca15a06c71f27284a3571c 100644 (file)
--- a/summaryqualcommand.cpp
+++ b/summaryqualcommand.cpp
@@ -162,7 +162,7 @@ int SummaryQualCommand::execute(){
                if (namefile != "") { nameMap = m->readNames(namefile); }
                
                vector<unsigned long long> positions; 
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
                positions = m->divideFile(qualfile, processors);
                for (int i = 0; i < (positions.size()-1); i++) {        lines.push_back(linePair(positions[i], positions[(i+1)]));      }
 #else  
@@ -170,6 +170,7 @@ int SummaryQualCommand::execute(){
                        lines.push_back(linePair(0, 1000)); 
                }else {
                        positions = m->setFilePosFasta(qualfile, numSeqs); 
+            if (positions.size() < processors) { processors = positions.size(); }
                        
                        //figure out how many sequences you have to process
                        int numSeqsPerProcessor = numSeqs / processors;
@@ -267,7 +268,7 @@ int SummaryQualCommand::driverCreateSummary(vector<int>& position, vector<int>&
                                count += num;
                        }
                        
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
                        unsigned long long pos = in.tellg();
                        if ((pos == -1) || (pos >= filePos.end)) { break; }
 #else
@@ -291,7 +292,7 @@ int SummaryQualCommand::createProcessesCreateSummary(vector<int>& position, vect
                int numSeqs = 0;
                processIDS.clear();
                
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
                
                //loop through and create all the processes you want
                while (process != processors) {