if (namefile != "") { nameMap = m->readNames(namefile); }
else if (countfile != "") {
CountTable ct;
- ct.readTable(countfile);
+ ct.readTable(countfile, false, false);
nameMap = ct.getNameMap();
}
//pass numSeqs to parent
ofstream out;
- string tempFile = qualfile + toString(getpid()) + ".num.temp";
+ string tempFile = qualfile + m->mothurGetpid(process) + ".num.temp";
m->openOutputFile(tempFile, out);
out << numSeqs << endl;